FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | lane3_Index12_2.fq |
| File type | Conventional base calls |
| Encoding | Illumina 1.5 |
| Total Sequences | 20905260 |
| Filtered Sequences | 0 |
| Sequence length | 90 |
| %GC | 49 |
Per base sequence quality
Per sequence quality scores
![[FAIL]](Icons/error.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
![[WARN]](Icons/warning.png)
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCAGG | 4418740 | 2.62497 | 5.5713434 | 1 |
| CCTGG | 4410640 | 2.604959 | 6.2376595 | 1 |
| CTTCT | 4584725 | 2.5094583 | 5.5832787 | 1 |
| CTGGA | 4194895 | 2.4449503 | 8.823388 | 1 |
| TCCAG | 4121900 | 2.3572576 | 5.761723 | 2 |
| CTGCT | 4075805 | 2.3173757 | 5.1716495 | 1 |
| CTCCT | 4146720 | 2.3133874 | 8.036679 | 1 |
| CTGGG | 3793875 | 2.2836087 | 8.486443 | 1 |
| CAGGA | 3830775 | 2.2457542 | 5.526809 | 1 |
| CTTCA | 4002400 | 2.2035038 | 5.7693124 | 1 |
| CCCAG | 3733465 | 2.176199 | 7.308245 | 1 |
| CTCCA | 3869250 | 2.171186 | 8.281978 | 1 |
| CAGAA | 3677955 | 2.0878165 | 5.0239296 | 1 |
| CTCTG | 3557875 | 2.0228965 | 6.393514 | 1 |
| CTGGC | 3208085 | 1.8947207 | 5.6083813 | 1 |
| TGGAA | 3248245 | 1.8683033 | 5.1327415 | 2 |
| CTGAA | 3258885 | 1.8391974 | 5.6009583 | 1 |
| CTCAG | 3030025 | 1.7328295 | 6.286419 | 1 |
| CTTTG | 3050395 | 1.7016182 | 5.104973 | 1 |
| CTGGT | 2889860 | 1.674554 | 5.24777 | 1 |
| CTTGG | 2824405 | 1.6366255 | 5.3831143 | 1 |
| CTCCC | 2732690 | 1.5538567 | 5.1831036 | 1 |